PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0161391

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 371aa MW: 41430.2 Da PI: 5.3831

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0161391	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.6e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd lv++++++G+g+W+ ++ g+ R++k+c++rw +yl RcHm_v2.0_Chr2g0161391 14 KGPWTSEEDVVLVNYIQEHGPGNWRNLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.4	2.8e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ RcHm_v2.0_Chr2g0161391 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MGRAPCCDKN GLKKGPWTSE EDVVLVNYIQ EHGPGNWRNL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHAPRL DLLDLSSILG SYVSNINPAA ALLNLSNLLG TQQALNVNPE LLRLVTTLSS 180 LKQGNQQMFS QNQNQVCNIS QDLQNQLVPS LQSNPQFQNL FQDDFSPDMA NLKQLMQMIN 240 TEGNLPNMSN FSSPASYSQE NIVPNSNFGP ETAVSNLPSY VPSSTSNSTV PELAGNSFFQ 300 LPLNNSNVNH DFGFDSVLST PHSSPTTLNS SGTYNNINSS STEDERDLES YCSNLLKFEI 360 PDSTLDINDY M

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MGRAPCCDKN GLKKGPWTSE EDVVLVNYIQ EHGPGNWRNL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHAPRL DLLDLSSILG SYVSNINPAA ALLNLSNLLG TQQALNVNPE LLRLVTTLSS  180
LKQGNQQMFS QNQNQVCNIS QDLQNQLVPS LQSNPQFQNL FQDDFSPDMA NLKQLMQMIN  240
TEGNLPNMSN FSSPASYSQE NIVPNSNFGP ETAVSNLPSY VPSSTSNSTV PELAGNSFFQ  300
LPLNNSNVNH DFGFDSVLST PHSSPTTLNS SGTYNNINSS STEDERDLES YCSNLLKFEI  360
PDSTLDINDY M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-100	MYB family protein