PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0161281
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 300aa    MW: 33940.5 Da    PI: 6.8429
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0161281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.9e-131461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W++eEd++l  +++ +G  +W+  ++  g  R++k+c++rw +yl
  RcHm_v2.0_Chr2g0161281 14 KGAWSAEEDDKLRAYIQSYGHWNWRQLPKFAGIQRCGKSCRLRWKNYL 61
                            79******************99**********66************97 PP
2Myb_DNA-binding55.81e-1768112248
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             g  T+eE+ l++++++qlG++ W+ Ia++++ gRt++++k++w++++
  RcHm_v2.0_Chr2g0161281  68 GDYTEEEEALIIKLHEQLGNK-WSMIAAKLP-GRTDNEIKNHWHTHM 112
                             568******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MVRAPFYDKS GVKKGAWSAE EDDKLRAYIQ SYGHWNWRQL PKFAGIQRCG KSCRLRWKNY  60
LQPGVKHGDY TEEEEALIIK LHEQLGNKWS MIAAKLPGRT DNEIKNHWHT HMKKKKKKRT  120
KEQQNQASSG QVVLLKDHQQ SSDDHEYSSS NSDNQLGAHE SATHNCNHAN SLQLLHYPQI  180
LESSPVVSRE STFSSSTSSA KYFSSSSSSS SSSSPNNHEA RGSTVIMNYL GDQDIVMVSS  240
SETMILDQEY SAGDFWTKPF LQDNTCIESD TISSSSSYLL SYDEGMDLFY QVMPTLQEGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119KKKKKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.12e-51MYB family protein