PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0160481
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 303aa    MW: 33160.7 Da    PI: 8.4531
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0160481genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-081521921055
                             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             r+RR+ + +++  L++llP+      kK++ a++Le A +Y++ Lq
  RcHm_v2.0_Chr2g0160481 152 RKRRQTLSDKMRCLQKLLPWE-----KKMDNATTLEAAHRYVRFLQ 192
                             9*******************9.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MEKTEKEILM SLHQESSSKS PEETQATFTG MFPVNLHSIL AANTTQPLLP LSLFADNYCS  60
LSAPKTEPPL FHNHHQDQPP QYGAVSAQTS SLIDYYSIFN HLPDLLSLDH SPYKRPRLLD  120
HQTLASSYQL YPTPAESPPS PVVVPRGSSL ARKRRQTLSD KMRCLQKLLP WEKKMDNATT  180
LEAAHRYVRF LQAQVAALQA MPIVASDSAG SLPVLTRGVG GGSGEVEVLS TLSRSQMLQV  240
AVNSPVAQMR MSDLGRCVFS VEQLALLNKK SVIRSAMVSA SGHYYPTTTT SFIDSSASAS  300
TTN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.11e-22bHLH family protein