PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0160151

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CO-like

Protein Properties

Length: 450aa MW: 49467.3 Da PI: 5.4935

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0160151	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21	7.1e-07	46	83	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+++++++++ C d ++ lC++C + H++ H RcHm_v2.0_Chr2g0160151 46 LCDKCNDQPATVRCLDENMSLCQSCEWN-HNNgvtgmgH 83 6************************888.9776666666 PP
2	CCT	62.9	1e-21	394	437	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ RcHm_v2.0_Chr2g0160151 394 RDKAKMRYEEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKSG 437 899**************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MRPCELCWRA SALIYCRADM ARLCLNCDGS VHSANALARR HSRWFLCDKC NDQPATVRCL 60 DENMSLCQSC EWNHNNGVTG MGHRNQAISC YTGCPSLSEI SRIWSAVLEG GSASGGFGGS 120 AWESLGGSVM PKNENNCISN CLERRDSDAS SFGVVSAGKL NEVLAESNCT PKFEPWMAPS 180 AMIPSNPNCI QPQCKDQAPF LPQESSQMPK GSSNFKDLGI QDGNDLCEGL NMDDVPLDVE 240 NDDELFSCSQ GPSRYSFEDG ELDCLLMDQK NLSVTESNGP HSDNAIQQAS PSRQQECTVG 300 FHSSCVSDSV MPPVMNAGST VNCSLLMNPS CSRNINLEGL INPTGQVHSS ISLSLSSITR 360 DTTHPDYQDC GLSPVFLSAE PWDSTLETSS PRARDKAKMR YEEKKKTRTF GKQIRYASRK 420 ARADTRKRVK GRFVKSGEEY DYDPLVRRSF

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MRPCELCWRA SALIYCRADM ARLCLNCDGS VHSANALARR HSRWFLCDKC NDQPATVRCL  60
DENMSLCQSC EWNHNNGVTG MGHRNQAISC YTGCPSLSEI SRIWSAVLEG GSASGGFGGS  120
AWESLGGSVM PKNENNCISN CLERRDSDAS SFGVVSAGKL NEVLAESNCT PKFEPWMAPS  180
AMIPSNPNCI QPQCKDQAPF LPQESSQMPK GSSNFKDLGI QDGNDLCEGL NMDDVPLDVE  240
NDDELFSCSQ GPSRYSFEDG ELDCLLMDQK NLSVTESNGP HSDNAIQQAS PSRQQECTVG  300
FHSSCVSDSV MPPVMNAGST VNCSLLMNPS CSRNINLEGL INPTGQVHSS ISLSLSSITR  360
DTTHPDYQDC GLSPVFLSAE PWDSTLETSS PRARDKAKMR YEEKKKTRTF GKQIRYASRK  420
ARADTRKRVK GRFVKSGEEY DYDPLVRRSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	3e-84	CO-like family protein