PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0159111

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 528aa MW: 57417.8 Da PI: 5.6697

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0159111	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	38	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ + g+ R++k+c++rw ++l RcHm_v2.0_Chr2g0159111 38 KGPWTAAEDSILMEYVKKHGEGNWNAVQKNSGLARCGKSCRLRWANHL 85 79******************************************9986 PP
2	Myb_DNA-binding	46.2	1.1e-14	91	134	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+ T+eE+ ++++++++G++ W++ a+ ++ gRt++++k++w++ RcHm_v2.0_Chr2g0159111 91 KGSLTAEEERMIIELHAKYGNK-WARMASQLP-GRTDNEIKNYWNT 134 6788****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MIMSNSRDGS MDLNEMVTAA QLGGGAHQLH QPLRGLKKGP WTAAEDSILM EYVKKHGEGN 60 WNAVQKNSGL ARCGKSCRLR WANHLRPNLK KGSLTAEEER MIIELHAKYG NKWARMASQL 120 PGRTDNEIKN YWNTRMKRRH RAGLPIYPHE LQHEAAASFH HQQAHHQQQR HNSNSSSSSF 180 SSLLSSSHPR KANYSSTPSL SLYDHISFDA SLQNHHNSPS LNYSNSAMTT QFNGNGGFAI 240 PLSPVSPVSP FGSSSSALFN QTILPTPSQY YNSGHGGFGN YSTLSLSSMI MGTPTYEPMN 300 SELPSNQTPP YSPYTPTKPA SSANFNGGEG LMEASGNTNG YEIETVTSQG KRGSGLLDDV 360 LVQADVICGN KRSRSGDSSS AESGKDKYIV EEEDESAGQE EEEDNVQEES TWKSSGGNSA 420 ENLRDGSSSP SVGMKPSEDP LEDMDDDLLS LLNFQSAAPE SESWYGGSIS DQASPGMNGA 480 SDNNNVSLDI RQNTSTYAST VNMSAAEPDD EVKRSLPPCF WNNMPGIC

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MIMSNSRDGS MDLNEMVTAA QLGGGAHQLH QPLRGLKKGP WTAAEDSILM EYVKKHGEGN  60
WNAVQKNSGL ARCGKSCRLR WANHLRPNLK KGSLTAEEER MIIELHAKYG NKWARMASQL  120
PGRTDNEIKN YWNTRMKRRH RAGLPIYPHE LQHEAAASFH HQQAHHQQQR HNSNSSSSSF  180
SSLLSSSHPR KANYSSTPSL SLYDHISFDA SLQNHHNSPS LNYSNSAMTT QFNGNGGFAI  240
PLSPVSPVSP FGSSSSALFN QTILPTPSQY YNSGHGGFGN YSTLSLSSMI MGTPTYEPMN  300
SELPSNQTPP YSPYTPTKPA SSANFNGGEG LMEASGNTNG YEIETVTSQG KRGSGLLDDV  360
LVQADVICGN KRSRSGDSSS AESGKDKYIV EEEDESAGQE EEEDNVQEES TWKSSGGNSA  420
ENLRDGSSSP SVGMKPSEDP LEDMDDDLLS LLNFQSAAPE SESWYGGSIS DQASPGMNGA  480
SDNNNVSLDI RQNTSTYAST VNMSAAEPDD EVKRSLPPCF WNNMPGIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	3e-72	MYB family protein