PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0156181

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 456aa MW: 51539.6 Da PI: 6.5219

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0156181	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.9	2.1e-12	13	53	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++++++G g+W+ +++++g +R + qc+++++ RcHm_v2.0_Chr2g0156181 13 WNADEEMLLLEGIEMYGFGNWTEVSEHVG-TRRRQQCIDHYN 53 ***************************.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MDNLSFPLIC PDWNADEEML LLEGIEMYGF GNWTEVSEHV GTRRRQQCID HYNAIYLNSP 60 CFPLPDMSHV MGKSREDLLA LAKGSGQIKK ELPMFMEITL KEVSPFSAGA KCEEPKKTAA 120 SKSSSHSTAD GASGAGKKAS NKLQIKDEPK VTKVEESQRS IGEKKLRSLV EEGPSVTELS 180 GYNYKRQEFE IEYDNDAEQI LADMEFLDTD TDRDRELKLR VLHVYGKRLD ERKRRKDFVL 240 ERNLLHPDPL EKNLSPEVGE IYQRFKVFMQ FHSNEDHKEL LKSIIEEQQI VKRILDLQEA 300 RAAGCRTATE ATKYLEQKRK NESEESLQKI KENSQAGASG KVLQQISPRG AVRGSALLHP 360 GIKDLPLTTQ PIPNPLDDWD ISGLAGANLL SETDKRLCCE LRIIPSHYLH MLQTISTEIS 420 SGNVKKKSDA HSLFKAEPSK VDRVFDMVIR KGLTLA

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MDNLSFPLIC PDWNADEEML LLEGIEMYGF GNWTEVSEHV GTRRRQQCID HYNAIYLNSP  60
CFPLPDMSHV MGKSREDLLA LAKGSGQIKK ELPMFMEITL KEVSPFSAGA KCEEPKKTAA  120
SKSSSHSTAD GASGAGKKAS NKLQIKDEPK VTKVEESQRS IGEKKLRSLV EEGPSVTELS  180
GYNYKRQEFE IEYDNDAEQI LADMEFLDTD TDRDRELKLR VLHVYGKRLD ERKRRKDFVL  240
ERNLLHPDPL EKNLSPEVGE IYQRFKVFMQ FHSNEDHKEL LKSIIEEQQI VKRILDLQEA  300
RAAGCRTATE ATKYLEQKRK NESEESLQKI KENSQAGASG KVLQQISPRG AVRGSALLHP  360
GIKDLPLTTQ PIPNPLDDWD ISGLAGANLL SETDKRLCCE LRIIPSHYLH MLQTISTEIS  420
SGNVKKKSDA HSLFKAEPSK VDRVFDMVIR KGLTLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	237	RKRRKD