PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0156141

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 690aa MW: 79400 Da PI: 6.2894

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0156141	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.9	1.9e-24	69	160	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke ++w+v+++++ RcHm_v2.0_Chr2g0156141 69 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgISQWYVSQFSNV 154 69******************8888.**************************************998766789***** PP FAR1 85 HnHela 90 HnHel RcHm_v2.0_Chr2g0156141 155 HNHELL 160 **96 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MKPSNNIWIP RQQCPCGDWK CYIKYEGDDP TSVSSLHVKS EITSSSSSSE AVFTPYVGQI 60 FKTDDDAFEY YSNFARKNGF SIRKARSTES QNLGIYRRDF VCYRSGFNQP RKKANVEHPR 120 ERKSVRCGCD AKLYLTKEIV DGISQWYVSQ FSNVHNHELL EDDQVRLLPA YRKIQEADQE 180 RILLLSKAGF PVNRIVKVLE LEKGVQPGHL PFIEKDIRNF IRTCKKTVQD NDALLNEKRE 240 NDMLELLEAC KAMTERDPGF VYDYTIDENE KVENIAWSYG HSVRAYTVFG DVVAFDTTYR 300 SITYGLLLGV WFGIDNHGRA TFLGCVLLHD ESSHSFAWAL QAFMRFMRGR YPQTILTDID 360 SGLRDAIARE LPSTKHVICI WHILSKISSW FSLPLGPQYE NFKAEFDVLS HLESVEDFEH 420 QWNILAARYG LVSDKHIGLL YSSRESWSLS YIRGYFLART LTAEFSLALE SFLKRILNAQ 480 TCLQVFFEQV SIAANFGNQT REGMQYMNVK TGMPIEEHAR NILTPYAFSV LQHEIVLSVQ 540 YATTEMGSGS YLVRHYKKLD GECLVIWIPD DEQIHCSCKE FEHSGILCRH SLRVLVVKNY 600 FQLPEKYFLL RWRLESSLDS LADENAQISA DDCAESFNTL TASLLTESLV SKERFNYVHR 660 ELSSLLEHVR SMPVIEEYAV NMAGNSISDS

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MKPSNNIWIP RQQCPCGDWK CYIKYEGDDP TSVSSLHVKS EITSSSSSSE AVFTPYVGQI  60
FKTDDDAFEY YSNFARKNGF SIRKARSTES QNLGIYRRDF VCYRSGFNQP RKKANVEHPR  120
ERKSVRCGCD AKLYLTKEIV DGISQWYVSQ FSNVHNHELL EDDQVRLLPA YRKIQEADQE  180
RILLLSKAGF PVNRIVKVLE LEKGVQPGHL PFIEKDIRNF IRTCKKTVQD NDALLNEKRE  240
NDMLELLEAC KAMTERDPGF VYDYTIDENE KVENIAWSYG HSVRAYTVFG DVVAFDTTYR  300
SITYGLLLGV WFGIDNHGRA TFLGCVLLHD ESSHSFAWAL QAFMRFMRGR YPQTILTDID  360
SGLRDAIARE LPSTKHVICI WHILSKISSW FSLPLGPQYE NFKAEFDVLS HLESVEDFEH  420
QWNILAARYG LVSDKHIGLL YSSRESWSLS YIRGYFLART LTAEFSLALE SFLKRILNAQ  480
TCLQVFFEQV SIAANFGNQT REGMQYMNVK TGMPIEEHAR NILTPYAFSV LQHEIVLSVQ  540
YATTEMGSGS YLVRHYKKLD GECLVIWIPD DEQIHCSCKE FEHSGILCRH SLRVLVVKNY  600
FQLPEKYFLL RWRLESSLDS LADENAQISA DDCAESFNTL TASLLTESLV SKERFNYVHR  660
ELSSLLEHVR SMPVIEEYAV NMAGNSISDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein