PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr2g0156101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 191aa MW: 21335.6 Da PI: 5.0509 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.9 | 5.5e-16 | 22 | 82 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+ ql++L+ l++ +yp+ e+++e+ +l +++ ++V++WFqN +a+e++ RcHm_v2.0_Chr2g0156101 22 NRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHLkqygQIEGKNVFFWFQNLKARERQ 82 7****************96569*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 94.7 | 8.2e-31 | 21 | 83 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i +L++yG+ie+kNVf+WFQN kaRerqk RcHm_v2.0_Chr2g0156101 21 NNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLKQYGQIEGKNVFFWFQNLKARERQK 83 78***************9889*****************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence |
MEQQTQQQIE DGGNNQAAGT NNRWAPTPPQ LRILKGLYYD KGFKYPTPEQ IQEICLHLKQ 60 YGQIEGKNVF FWFQNLKARE RQKLKEFRNV PVGGSLDLNF GSTGSTSNDR STDRSIDLNF 120 GSRVGYGADG SIMEQRGEYH QEIETLPLFP MHGEDILGNM KTTSEGGGGY GGGSNISLEL 180 SLNSYRDADM T |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17950.1 | 3e-23 | WOX family protein |