PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0152511

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 538aa MW: 58909.3 Da PI: 7.1713

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0152511	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.6	8.2e-17	347	393	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq RcHm_v2.0_Chr2g0152511 347 VHNLSERRRRDRINEKMKALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 393 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MNSCIPDWNF EGDLPLTNQK KPLGPDHELV ELLWRNGQVV LHSQTNRKPG PNPNESRQVQ 60 KHDQIRVGGF YGNSGNLIHD EDAVSMIQYP IEDSFDKEFS HFFSELPSCD SLEIEKPIKQ 120 FGEEKFVKFD APSTTHLVSS SPQPNVKSST GVAYPENPMP PPRFQISNPT EKNQNLGGLG 180 KIVNFSQFST LGKGVVGSSR KQLGGKDPGK LNQAEVRECS MMTVGSSYSG SNQVPNDFDV 240 SRASSNGDGT TGFSTGPLYN NVQKMMPLSE GGMTETLDPT LTSSSGGSGS SFGRGGKQSN 300 VVNSNKRKGR DAEDSECQSE AAEIESAAGN KPAQRSGSSR RTRAAEVHNL SERRRRDRIN 360 EKMKALQELI PHSNKTDKAS MLDEAIEYLK SLQLQLQVMW MGGGMAPMMF PGVQHYMSRM 420 GMGMGPPAMP SMHNLMQLPR VPLVDQCMTV TPPTNQAVMC QTPVLNPVDY HNQMQNPSIQ 480 EQYARLMGFH HMQTMSQPMN MFRFGSQPLP QSQMMAPTGM NTGPLSGGAA TNDALSGK

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MNSCIPDWNF EGDLPLTNQK KPLGPDHELV ELLWRNGQVV LHSQTNRKPG PNPNESRQVQ  60
KHDQIRVGGF YGNSGNLIHD EDAVSMIQYP IEDSFDKEFS HFFSELPSCD SLEIEKPIKQ  120
FGEEKFVKFD APSTTHLVSS SPQPNVKSST GVAYPENPMP PPRFQISNPT EKNQNLGGLG  180
KIVNFSQFST LGKGVVGSSR KQLGGKDPGK LNQAEVRECS MMTVGSSYSG SNQVPNDFDV  240
SRASSNGDGT TGFSTGPLYN NVQKMMPLSE GGMTETLDPT LTSSSGGSGS SFGRGGKQSN  300
VVNSNKRKGR DAEDSECQSE AAEIESAAGN KPAQRSGSSR RTRAAEVHNL SERRRRDRIN  360
EKMKALQELI PHSNKTDKAS MLDEAIEYLK SLQLQLQVMW MGGGMAPMMF PGVQHYMSRM  420
GMGMGPPAMP SMHNLMQLPR VPLVDQCMTV TPPTNQAVMC QTPVLNPVDY HNQMQNPSIQ  480
EQYARLMGFH HMQTMSQPMN MFRFGSQPLP QSQMMAPTGM NTGPLSGGAA TNDALSGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	352	357	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	3e-39	bHLH family protein