PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0150261
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 191aa    MW: 21257.6 Da    PI: 5.2983
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0150261genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.12.3e-162282357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+ ql++L+ l++    +yp+ e+++e+  +l    ++++++V++WFqN +a+ek+
  RcHm_v2.0_Chr2g0150261 22 NRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHLkqygQIEDKNVFFWFQNLKAREKQ 82
                            7****************96569*************************************97 PP
2Wus_type_Homeobox94.59.3e-312183364
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRe+qk
  RcHm_v2.0_Chr2g0150261 21 NNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLKQYGQIEDKNVFFWFQNLKAREKQK 83
                            78***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MELQTQQQIE GGGNNQAAGT NNRWAPTPPQ LRILKGLYYD KGFKYPTPEQ IQEICLHLKQ  60
YGQIEDKNVF FWFQNLKARE KQKLKEFRNV PVGGSLDLNF GSTGSTSNDR STDRSIDLNF  120
GSRVGYGADG SIMEQRGEYH QEIETLPLFP MHGEDILGNM KTTSEGGGGY GGGSHISLEL  180
SLNSYKDADM A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-21WOX family protein