PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0146961

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 165aa MW: 19229.7 Da PI: 9.4461

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0146961	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.5	1.8e-14	16	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 + +WT+ Ed++ +d+vk +G g W++ +++ g ++R+++++++rw++yl RcHm_v2.0_Chr2g0146961 16 KVAWTAFEDQIVKDYVKNHGAGKWDKLSKETGecLKRSGNSVRLRWLNYL 65 568*********************************************97 PP
2	Myb_DNA-binding	51.2	2.8e-16	75	115	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T+ E++ll++++k+lG++ W++Iar+++ gRt++q+k++w++ RcHm_v2.0_Chr2g0146961 75 TEYEEDLLIRLHKLLGNR-WSLIARRIP-GRTENQVKNYWNST 115 888*************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence
MGSRSHCPRD KHGRKKVAWT AFEDQIVKDY VKNHGAGKWD KLSKETGECL KRSGNSVRLR 60 WLNYLRPDIN TSSITEYEED LLIRLHKLLG NRWSLIARRI PGRTENQVKN YWNSTLKKKL 120 SQKNLCEELC NWTLEDSSSP VPTTDQDDPH WTKKNVYEEG QACQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27920.1	9e-48	MYB family protein