PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0145381

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GRF

Protein Properties

Length: 364aa MW: 41459.4 Da PI: 9.4392

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0145381	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.4	3.3e-25	118	162	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ RcHm_v2.0_Chr2g0145381 118 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEA 162 79****************************************997 PP
2	QLQ	55.8	1.4e-19	53	83	2	32
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 +FTa+Q+q+L++Q+l++Ky+++++P+P +L+ RcHm_v2.0_Chr2g0145381 53 PFTATQWQELEHQALIFKYMVSGVPIPTDLV 83 9****************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MHKKRIQCPL PFLLLLLLLL LVKSPELLSL FSIVGSKMMS GGNPSSARNY RYPFTATQWQ 60 ELEHQALIFK YMVSGVPIPT DLVYSFKRRL DSSISSRLFP HHPFGWGCYD MGFGRKIDPE 120 PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV EASSSSSTTT PNNNNTIPTP 180 PEYNPASIHK NLSKTSPSMF SSSFTNETPH TQHQSSSLYP FLSRPQGSGT NPQLFLNSGS 240 YVSEADHRDY RYLQGTKEGV DHELAFFPAE SSANARSLMS SYKGYSSQSQ FQSLTDHYPQ 300 QQSQDEQHCY VLGTDFKSSR PIKTENKEAD QTQKSLHHFF GDWPPKSTDT WLDLAPNSRL 360 HNDG

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MHKKRIQCPL PFLLLLLLLL LVKSPELLSL FSIVGSKMMS GGNPSSARNY RYPFTATQWQ  60
ELEHQALIFK YMVSGVPIPT DLVYSFKRRL DSSISSRLFP HHPFGWGCYD MGFGRKIDPE  120
PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV EASSSSSTTT PNNNNTIPTP  180
PEYNPASIHK NLSKTSPSMF SSSFTNETPH TQHQSSSLYP FLSRPQGSGT NPQLFLNSGS  240
YVSEADHRDY RYLQGTKEGV DHELAFFPAE SSANARSLMS SYKGYSSQSQ FQSLTDHYPQ  300
QQSQDEQHCY VLGTDFKSSR PIKTENKEAD QTQKSLHHFF GDWPPKSTDT WLDLAPNSRL  360
HNDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	4e-62	GRF family protein