PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0145091

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 605aa MW: 66440.8 Da PI: 7.245

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0145091	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	493	541	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G+g+W+ I r Rt ++k++w+++l RcHm_v2.0_Chr2g0145091 493 AWTLVEVMKLVEGVSKCGTGRWSEIKRLSFatfSYRTSVDLKDKWRNLL 541 7************************99999989**********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence
MEAVFVVEGN DEGKCEEIGV EKSSSSLSSP KQITDPVVYK LVRVEGDGRL VPATDDEVME 60 VEDFLVDEQI ELPVVMSTGT VECISNESSS GKPQKESSEG LSPSEGKEAD AKLSAHLEEI 120 APSSSLSLDV SHINESETKG ECSKHPDGPI ESVSSASAVC TSSKRDFYAS NREICLDNLS 180 IRELHELFRA TFGRETTVKD KLWLKRRIAM GLTNSCDVST TTFTIINKKL VKNGKDNSLQ 240 NAHDMHTEGS DVGAKNLGYE DSPKSHNSQL ENHQVVSAKR SGSLSEEEYG CEDHTMDQRA 300 AKRVRKPTKR YIEELSEVES RDHSPKVISS AKTAGHEETS PTCSARPLRN VSTNERTIVT 360 RLDSLGGSGV QVPYVSRVRR SRPRKNIMAL MNFNPSGMGV TAKLVKETLA VCTSLPESEC 420 ADKVLKARSA SEQIKPLFAA EPEKDKRRSV MSTFEHGKNL GLKQTDSSEE NSDDSIAAVP 480 TVKGGMRRKH HRAWTLVEVM KLVEGVSKCG TGRWSEIKRL SFATFSYRTS VDLKDKWRNL 540 LKASFAQTPP DDGSRKHVAV PIPASILLKV RELAEMHAQV PPNLGASKLT ANVTRSVHQT 600 RSGYL

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence

MEAVFVVEGN DEGKCEEIGV EKSSSSLSSP KQITDPVVYK LVRVEGDGRL VPATDDEVME  60
VEDFLVDEQI ELPVVMSTGT VECISNESSS GKPQKESSEG LSPSEGKEAD AKLSAHLEEI  120
APSSSLSLDV SHINESETKG ECSKHPDGPI ESVSSASAVC TSSKRDFYAS NREICLDNLS  180
IRELHELFRA TFGRETTVKD KLWLKRRIAM GLTNSCDVST TTFTIINKKL VKNGKDNSLQ  240
NAHDMHTEGS DVGAKNLGYE DSPKSHNSQL ENHQVVSAKR SGSLSEEEYG CEDHTMDQRA  300
AKRVRKPTKR YIEELSEVES RDHSPKVISS AKTAGHEETS PTCSARPLRN VSTNERTIVT  360
RLDSLGGSGV QVPYVSRVRR SRPRKNIMAL MNFNPSGMGV TAKLVKETLA VCTSLPESEC  420
ADKVLKARSA SEQIKPLFAA EPEKDKRRSV MSTFEHGKNL GLKQTDSSEE NSDDSIAAVP  480
TVKGGMRRKH HRAWTLVEVM KLVEGVSKCG TGRWSEIKRL SFATFSYRTS VDLKDKWRNL  540
LKASFAQTPP DDGSRKHVAV PIPASILLKV RELAEMHAQV PPNLGASKLT ANVTRSVHQT  600
RSGYL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	379	385	RRSRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	2e-99	MYB_related family protein