PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0145021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 260aa MW: 29115.4 Da PI: 5.3631 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.9 | 5.5e-16 | 74 | 134 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+ ql++L+ l++ +yp+ e+++e+ +l ++++++V++WFqN +a+e++ RcHm_v2.0_Chr2g0145021 74 NRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 134 7****************96569*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 94.3 | 1.1e-30 | 73 | 135 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i +L++yG+iedkNVf+WFQN kaRerqk RcHm_v2.0_Chr2g0145021 73 NNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 135 78***************9889*****************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MLTRSINRCI LRDCSLQKKI LPSSSLSLST LQPFFRNSNP FFINMEPQTL QLMEQQTQQQ 60 IEDGGNNQAA GTNNRWAPTP PQLRILKGLY YDKGFKYPTP EQIQEICLHL KQYGQIEDKN 120 VFFWFQNLKA RERQKLKEFR NVPVGGSLDL NFGSTSSTDD GRSIDLNFGS RVGYGVDPYS 180 SSPFNTNTST TSFGTTGGQS FMEQRGGDHQ EIETLPLFPM HGEDIFGNMK TTSEGGSGYG 240 GDSRISLELS LNSYGDADMV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 9e-22 | WOX family protein |