PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0144441
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 288aa    MW: 32214.7 Da    PI: 10.3232
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0144441genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.1e-114394147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                            +++WT eE++ lv +v+++G g Wk I            R+  ++k++w+++
  RcHm_v2.0_Chr2g0144441 43 KQKWTSEEEDALVAGVAKHGAGKWKNILIDPEfaqslILRSNIDLKDKWRNL 94
                            79*************************999999999956**********996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MSSSSLRKPK RISEREKEGF RQAHRRLGVK GRDRSKGRMG NHKQKWTSEE EDALVAGVAK  60
HGAGKWKNIL IDPEFAQSLI LRSNIDLKDK WRNLSPSLAL AQVTQKKRKN SKIKNSVRYS  120
TPVLALASGT SPDAVMDDSN TEERYNALIF EALLTMKDPN GSDVDAIRNF IQQREEEPIP  180
HNFKRLVGAR LRSLVSLGKL EKTRNGFKIK VLGTKTPRVL ATSTETEDDA VHVAAYTIAD  240
AENKSFLAAE AVKEAERVSK IAEETESMLL LVKEINEQCS RGEVVHLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-61MYB_related family protein