PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0143681

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 379aa MW: 42112.3 Da PI: 6.7118

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0143681	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	6e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl RcHm_v2.0_Chr2g0143681 14 RGLWSPEEDEKLINYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	46.5	8.4e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++ +E l+++++ lG++ W+ Ia++++ gRt++++k++w+ RcHm_v2.0_Chr2g0143681 67 RGSFSSQEAALIIQLHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT NYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SSQEAALIIQ LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLIPHD 120 VIPALASFSH FLNPSNAGSD QESFFTTLIT NPNFGLQQEQ PYLPFPTPLP PSSFYHGDHS 180 ILKLDYTNYS SNRLHFPTPI QLPSNYSSSY DSSWSLGYQP HLFDSNHQQD QILNNIEVAP 240 HFNIGNELMV PTVASLPGYD HENLSVVSTM PQSCEINIDG SACRAMPFDP PDNHPPQELD 300 SLAKVSSCFG PFGDHGSYNP FDLQLPSNQL ELVDPVISSL PMLSQPSPSS ASSSLLPLPS 360 SQLFITNRNV LSSLGSLAS

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT NYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SSQEAALIIQ LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLIPHD  120
VIPALASFSH FLNPSNAGSD QESFFTTLIT NPNFGLQQEQ PYLPFPTPLP PSSFYHGDHS  180
ILKLDYTNYS SNRLHFPTPI QLPSNYSSSY DSSWSLGYQP HLFDSNHQQD QILNNIEVAP  240
HFNIGNELMV PTVASLPGYD HENLSVVSTM PQSCEINIDG SACRAMPFDP PDNHPPQELD  300
SLAKVSSCFG PFGDHGSYNP FDLQLPSNQL ELVDPVISSL PMLSQPSPSS ASSSLLPLPS  360
SQLFITNRNV LSSLGSLAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	2e-80	MYB family protein