PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0142501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 26622.6 Da PI: 6.1075 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.6 | 5.8e-13 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W + Ed++ d++k++G g W + +r+ g++R++k++++rw++yl RcHm_v2.0_Chr2g0142501 16 KGVWAASEDQIVRDYIKKHGVGKWGKLSRETGLKRCGKSVRLRWLNYL 63 789*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.3e-17 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ RcHm_v2.0_Chr2g0142501 69 RGNITEDEEELIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNS 112 7999******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MGESSTCYDK NEGPKKGVWA ASEDQIVRDY IKKHGVGKWG KLSRETGLKR CGKSVRLRWL 60 NYLRPGIVRG NITEDEEELI IRLHKLLGNR WSLIAGRIPG RTDNEIKNYW NSRLKRKLQQ 120 QNHLEVPEVP RNKEIREDLS SSAAVAAAAE KNPHLTGNNV NEDEDYHQHH DVDFAVGIEF 180 EATDNNNGTG DDEHLRNDLW WNNFIMDLND IQLDASEFQP DFPEIRLGNL R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-52 | MYB family protein |