PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0141851

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 435aa MW: 48400.7 Da PI: 6.7954

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0141851	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.3	5.6e-08	339	379	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L RcHm_v2.0_Chr2g0141851 339 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 379 69****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MDSFGWDSSH MITNTSTLWS NHHQHDLDQE SLLMSNNSSS SVFNIPIQDH QLQQVQESHK 60 MMKSNTQSPP SNAEMAQQHW GGKNLAAEQL CQAPFMINRT YSMNSLISSA FMADDHHVET 120 RPASTATCSI ESLDCLLSAT NSNTAEDTTS LNKDDAINST IFPDCRRSNL WNFGIGSATT 180 AVSSGETETA NNTSRPNRET QSFNKRSRNN DQSDPLKFYA ENYGQHFDLL QTDSSTTTTE 240 GGGFRLISEN PPKAKKLKSS SDQKSIALST TNINFQQPTS SSLSGSSTDQ EPDPEVIAQM 300 KEMIYRAAAF RPVNLGIEMV ERPKRKNVKI SSDPQTVAAR QRRERISERI RVLQKLVPGG 360 SKMDTASMLD EAANYLKFLR SQVKALENLG QKIDSMSNCL PPTSFAFSFN PSFPMQTHHV 420 PLHLNPNHNI HQPPN

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MDSFGWDSSH MITNTSTLWS NHHQHDLDQE SLLMSNNSSS SVFNIPIQDH QLQQVQESHK  60
MMKSNTQSPP SNAEMAQQHW GGKNLAAEQL CQAPFMINRT YSMNSLISSA FMADDHHVET  120
RPASTATCSI ESLDCLLSAT NSNTAEDTTS LNKDDAINST IFPDCRRSNL WNFGIGSATT  180
AVSSGETETA NNTSRPNRET QSFNKRSRNN DQSDPLKFYA ENYGQHFDLL QTDSSTTTTE  240
GGGFRLISEN PPKAKKLKSS SDQKSIALST TNINFQQPTS SSLSGSSTDQ EPDPEVIAQM  300
KEMIYRAAAF RPVNLGIEMV ERPKRKNVKI SSDPQTVAAR QRRERISERI RVLQKLVPGG  360
SKMDTASMLD EAANYLKFLR SQVKALENLG QKIDSMSNCL PPTSFAFSFN PSFPMQTHHV  420
PLHLNPNHNI HQPPN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	340	345	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-67	bHLH family protein