PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0140461
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 363aa    MW: 39085.7 Da    PI: 7.5813
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0140461genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.6e-13114158347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT+eE+  ++ + ++lG+g+W+ Iar   ++Rt+ q+ s+ qky
  RcHm_v2.0_Chr2g0140461 114 PWTEEEHRMFLIGLQKLGKGDWRGIARNYVTTRTPTQVASHAQKY 158
                             8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MTRRCSHCSN NGHNSRTCPS RGGGGGSSSC SSGGAGGGGV KLFGVRLTDG SFIKKSASMG  60
NLSTMASHYQ SSSPNPDSPP GYDPVHVRDG YLSDDPAHAS SSSNRRGDRK KGVPWTEEEH  120
RMFLIGLQKL GKGDWRGIAR NYVTTRTPTQ VASHAQKYFI RQSNSTRRKR RSSLFDMAPD  180
MAMDPPHMPE EQALLPSCQE ERESEDSKPS LNLSLGSECS RPMESTQEEK VIIEPDNQPV  240
MGLNGYPNGY PPVIPGFIPA YLPYPYPVWP SAGPLIIENG GEASHYPQVL KPVPMLPKEP  300
VNVDALVGMS QLSLVEAESL QSNPSPLSLT SLGEPSRQSA FHPNAPASEP DLSKGKTSAI  360
QAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.13e-96MYB_related family protein