PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0139261
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 341aa    MW: 37534.6 Da    PI: 6.7755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0139261genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000542022401255
                             HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             R +++ +++  L +++ +      +K + a++L +A+ YI+ Lq
  RcHm_v2.0_Chr2g0139261 202 RKEKLGDRITALHQIVSPF-----GKTDTASVLLEAIGYIRFLQ 240
                             6677888999999999987.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MMAGNPNWWS THPPSSIFPS QYVLGSSNSL PQLNSFPDQH NLQPPQSWSQ LLLGGLSGED  60
QDNFGSLNHF PPKRLENWED HQQQILIPQS YPRVNPVVDS NIIKQEVNSQ NNSNLCGGDG  120
GEEFQAPYNN RPSWSAAQIN MPVSSPRSCI TSLSSNNILD FSYNQKNQHA DHSSECNSPP  180
TDGMCKKARV QPSSSQPPLK VRKEKLGDRI TALHQIVSPF GKTDTASVLL EAIGYIRFLQ  240
SQIEALSSPY LGNASKNMRN NPHSVQGERN CVFPEDPGQL LNDNCSLKRK GASNQDSHQD  300
YKAKDLRSKG LCLVPVSCTQ NVGGDINIGA DYWAPAYGSG F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.17e-72bHLH family protein