PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0134921

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 715aa MW: 82151.2 Da PI: 5.964

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0134921	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.7	3.5e-22	107	189	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+++++eleHnH RcHm_v2.0_Chr2g0134921 107 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMVKFRLMESNRWRIIEVELEHNHL 187 9*************99997.66779**********99888.....*********************************8 PP FAR1 89 la 90 ++ RcHm_v2.0_Chr2g0134921 188 IS 189 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence
MPKPQGRQWY ECMTIRSTKT ETPFTLELLV RPAPTLHSCC SPEISHQMDE VSLNTEPAGE 60 DDADGYEIEG DCAMTEFVSQ TGIMQGENPL PPSAGMEFDS YEDVYYFYNC YAKQQGFGVR 120 VSNTWYRKSK ERYRGKLSCS SAGFKKKSEA NRPRPETRTG CPAMVKFRLM ESNRWRIIEV 180 ELEHNHLISP ASGKFYKSHK SIGGGTKRSL QLDSAEEVQK IRLFRTVIID SEGNRSIDVD 240 EGESGNKVDY SNQLKLKEGD AKAVQNFFSR LQLMDPDFFY VVDLNEKGCL RNLFWADARS 300 RVAYTYFSDV VAIDTTCLEN KFEVPLVSFS GVNHHGQSVL LGFGLIASGT IESYTWLFRA 360 WLTCILGRPP QAIITDQCRT LQTAIADVFP RASHCLCLSQ IMHKIPENLG GSFEYEVIKA 420 AFIRAVYYSL RVEEFEAAWE DMVQRHGIRD HKWLQALYDD RKRWVPVYLK DIFLAGMFPM 480 QPNEVVSSFS EEFLVKSTPL KEFLDKYDQA LQTHHQLEAL ADLDSRNSSY MFKSGSHFEL 540 QLSELYTNDI LRKFGKEVEG MYSCFSTRQL NVDGPVITYT VKEQTEVDGN SREMRDYEVL 600 YNPSEMEVLC VCGMFNLKGY LCRHALSILN QNGMQEIPTQ YILSRWRKDV KRSYVYDHSC 660 SGIDINNPVH RYDHLYKCIV QVVEEGRKSQ DRYKIALQEL DGILNKLCIT EDCAL

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence

MPKPQGRQWY ECMTIRSTKT ETPFTLELLV RPAPTLHSCC SPEISHQMDE VSLNTEPAGE  60
DDADGYEIEG DCAMTEFVSQ TGIMQGENPL PPSAGMEFDS YEDVYYFYNC YAKQQGFGVR  120
VSNTWYRKSK ERYRGKLSCS SAGFKKKSEA NRPRPETRTG CPAMVKFRLM ESNRWRIIEV  180
ELEHNHLISP ASGKFYKSHK SIGGGTKRSL QLDSAEEVQK IRLFRTVIID SEGNRSIDVD  240
EGESGNKVDY SNQLKLKEGD AKAVQNFFSR LQLMDPDFFY VVDLNEKGCL RNLFWADARS  300
RVAYTYFSDV VAIDTTCLEN KFEVPLVSFS GVNHHGQSVL LGFGLIASGT IESYTWLFRA  360
WLTCILGRPP QAIITDQCRT LQTAIADVFP RASHCLCLSQ IMHKIPENLG GSFEYEVIKA  420
AFIRAVYYSL RVEEFEAAWE DMVQRHGIRD HKWLQALYDD RKRWVPVYLK DIFLAGMFPM  480
QPNEVVSSFS EEFLVKSTPL KEFLDKYDQA LQTHHQLEAL ADLDSRNSSY MFKSGSHFEL  540
QLSELYTNDI LRKFGKEVEG MYSCFSTRQL NVDGPVITYT VKEQTEVDGN SREMRDYEVL  600
YNPSEMEVLC VCGMFNLKGY LCRHALSILN QNGMQEIPTQ YILSRWRKDV KRSYVYDHSC  660
SGIDINNPVH RYDHLYKCIV QVVEEGRKSQ DRYKIALQEL DGILNKLCIT EDCAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein