PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0134901

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 669aa MW: 77012 Da PI: 7.9513

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0134901	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.2	4.9e-22	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+l++++ ++++w+v ++ leHnH RcHm_v2.0_Chr2g0134901 60 NYYNCYAKEVGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMLRMRLVDSKRWRVLEVALEHNH 141 69***************************************9988.....99******************************* PP FAR1 88 el 89 l RcHm_v2.0_Chr2g0134901 142 LL 143 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MEVGSLNSEQ VQDPDCNEIA TDGDGVLTEL DAENRVPEGK KEFVAPAIGM EFESYEDAYN 60 YYNCYAKEVG FRVRVKNSWF KRNSKEKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAML 120 RMRLVDSKRW RVLEVALEHN HLLGTKIYKS MKKMGSGTKR KSQSSSDAEK RTIKLYRALV 180 IDSGGNGPSN SNATEARNDI PNQLNLKKGD TQAIYNYLCR MQLTNPNFFY LMDINDDGRL 240 RNVFWIDARS RAACGYFCDV IYIDNTYLAN KFEIPLVALV GINHHGQAVL LGCALLAGET 300 AESYIWLFKA WLTCVSGHSP QTIITDRCNV LQSAVAEVFP SCHHRFGLSL IIKKVPEKLG 360 GSRNYDAIRK TLLKAVYESL KVIEFEAAWG FMIQHFGVSD HEWLRSLYED RFRWAPVYLK 420 ETSFAGMSAA HPGETLSPFF DKYVHKQTPL KEFLDKYELA LQKKHKEEAL ADIESRSSSP 480 MLKTRCSFEL QLSKVYTKEI FKKFQFEVEE MYSCFSTTQL HIDGPIVIFL VKERVVADGN 540 RREIRDYEVL YNRTAGEVRC ICSCFNFHGY LCRHALCVLN FNGVEEIPSK YILSRWKKDY 600 KRLYIPDHGS NNVDVTDRMQ WFSQLYRSAL QIVEEGVISL DHYNVALQAF EESLKRVHEI 660 EDKHEPENL

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MEVGSLNSEQ VQDPDCNEIA TDGDGVLTEL DAENRVPEGK KEFVAPAIGM EFESYEDAYN  60
YYNCYAKEVG FRVRVKNSWF KRNSKEKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAML  120
RMRLVDSKRW RVLEVALEHN HLLGTKIYKS MKKMGSGTKR KSQSSSDAEK RTIKLYRALV  180
IDSGGNGPSN SNATEARNDI PNQLNLKKGD TQAIYNYLCR MQLTNPNFFY LMDINDDGRL  240
RNVFWIDARS RAACGYFCDV IYIDNTYLAN KFEIPLVALV GINHHGQAVL LGCALLAGET  300
AESYIWLFKA WLTCVSGHSP QTIITDRCNV LQSAVAEVFP SCHHRFGLSL IIKKVPEKLG  360
GSRNYDAIRK TLLKAVYESL KVIEFEAAWG FMIQHFGVSD HEWLRSLYED RFRWAPVYLK  420
ETSFAGMSAA HPGETLSPFF DKYVHKQTPL KEFLDKYELA LQKKHKEEAL ADIESRSSSP  480
MLKTRCSFEL QLSKVYTKEI FKKFQFEVEE MYSCFSTTQL HIDGPIVIFL VKERVVADGN  540
RREIRDYEVL YNRTAGEVRC ICSCFNFHGY LCRHALCVLN FNGVEEIPSK YILSRWKKDY  600
KRLYIPDHGS NNVDVTDRMQ WFSQLYRSAL QIVEEGVISL DHYNVALQAF EESLKRVHEI  660
EDKHEPENL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein