PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0133831
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 702aa    MW: 78561.1 Da    PI: 5.0244
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0133831genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.61.2e-22212265155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             k r++W++eLH++F+++   L G+ekA+Pk+ilelm+v++L++ +v+SHLQk+R 
  RcHm_v2.0_Chr2g0133831 212 KRRIVWSEELHKKFLDVFYYL-GPEKAVPKKILELMNVEDLSRGNVASHLQKFRE 265
                             689******************.********************************5 PP
2Myb_DNA-binding26.12e-08216264348
                             SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                              W++e++++++d++  lG++   +k+I + m+ + +++ ++ s++qk++
  RcHm_v2.0_Chr2g0133831 216 VWSEELHKKFLDVFYYLGPEkaVPKKILELMNvEDLSRGNVASHLQKFR 264
                             6*****************99***************************97 PP
3Response_reg77.16.5e-26271321106
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHTTTSEEEEEESTTTHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reeepklpiivvtahgeee 84 
                             vl vdD+ + ++ l+  l+k +y ev++a ++ eal++l+e++  +Dl++ D++mp+mdG++llk + +e  ++lp+i+v+++g+ e
  RcHm_v2.0_Chr2g0133831  27 VLAVDDDLTYLKFLEATLRKCNY-EVTTANHAYEALQILRENRnkFDLVISDVQMPDMDGFQLLKLLgHE--MDLPVIMVSGNGDTE 110
                             799********************.***************999889**********************555..47************* PP

                             HHHHHHHTTESEEEESS--HHH CS
            Response_reg  85 dalealkaGakdflsKpfdpee 106
                             ++++ ++ Ga  +l+Kp+++e 
  RcHm_v2.0_Chr2g0133831 111 LMKKGISHGACCYLVKPVNIEV 132
                             ******************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    
MDAKDQLGGS VGDQNGDMDR FPDGMRVLAV DDDLTYLKFL EATLRKCNYE VTTANHAYEA  60
LQILRENRNK FDLVISDVQM PDMDGFQLLK LLGHEMDLPV IMVSGNGDTE LMKKGISHGA  120
CCYLVKPVNI EVFKTIWQHV FRRKKLNSKD QCKSCDQDKV CKGTGESEEG MSAASSSDKN  180
GKHKRKRKHQ KEDDEEGEDD EDENEEPSTQ KKRRIVWSEE LHKKFLDVFY YLGPEKAVPK  240
KILELMNVED LSRGNVASHL QKFREQLKKG GSKKEKQRAT MVVDLGRKDS SYTLHTGPVD  300
ESGGRLSNPA PLSSYIPPQM LSRSNSPTDF NMPRINPSSH LLRPGQSQNL CNSINTVANL  360
QPSVLTNQSR NLFQVSQAPV EQNQLQQKNS TIDIRQSTPN NNGSTSTFPY KGLPGSSVGY  420
DCNTSMLQGN PQQKHGTLEF GNQSSLRVNS LNPKSFDNSL CRSSNFLDND GYGESWQGGM  480
QGCGQLYQFP STSLLRSEAS NFGQFPANNL GVSSSTPQIG NTPNDFSSLS ALSASVEEPR  540
ENIHIKNQGY AVPTMYCTPN QWWEDHKQDY NHNWNLSSIV SSNGVVDPLS LTLDQNDAVC  600
SRSINSSLFD QFNGGNRTIV QRLEVENSTM HTKIDPNEDH ILLEQAKSND GLVQNSLESL  660
DNQIELENDF DLLDGEFGFD AIQEQKKNDE YDLLDGGFRF EA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-82ARR-B family protein