PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0132251
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 358aa    MW: 40073.3 Da    PI: 8.184
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0132251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.28.6e-1353109155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g
  RcHm_v2.0_Chr2g0132251  53 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAARAYDLAALKYWG 109
                             57*******************99998898888888********************98 PP

2AP251.23e-16152203155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  RcHm_v2.0_Chr2g0132251 152 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 203
                             89****99**********99966...3.6*************************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MAKTSQKIQK NTTPSSSNNS NTTTSTTTSS PPATKVKRTR KSVRRDSPPQ RSSIYRGVTR  60
HRWTGRYEAH LWDKNCWNES QNKKGRQGAY DDEEAAARAY DLAALKYWGQ DTILNLPVST  120
YEEELKEMDG QSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY  180
LGTYATQEEA ATAYDMAAIE YRGLNAVTNF DLSRYIKSLC PNNENIPNNT QPNPNADLSS  240
IQNPDSKVEL GFMPHNPSPS TSESMVAVPR PGNGSSASSA LGLLLQSPKF KEMLERTSVV  300
DCSSTTTLEP NMPRRSFPDD IQTYFDCQDL NSYAEGDDII FGELNSFASP VFHCELDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.17e-98AP2 family protein