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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0132251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | AP2 | ||||||||
Protein Properties | Length: 358aa MW: 40073.3 Da PI: 8.184 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.2 | 8.6e-13 | 53 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa+a++ a++k++g RcHm_v2.0_Chr2g0132251 53 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAARAYDLAALKYWG 109 57*******************99998898888888********************98 PP | |||||||
2 | AP2 | 51.2 | 3e-16 | 152 | 203 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g RcHm_v2.0_Chr2g0132251 152 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 203 89****99**********99966...3.6*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence |
MAKTSQKIQK NTTPSSSNNS NTTTSTTTSS PPATKVKRTR KSVRRDSPPQ RSSIYRGVTR 60 HRWTGRYEAH LWDKNCWNES QNKKGRQGAY DDEEAAARAY DLAALKYWGQ DTILNLPVST 120 YEEELKEMDG QSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY 180 LGTYATQEEA ATAYDMAAIE YRGLNAVTNF DLSRYIKSLC PNNENIPNNT QPNPNADLSS 240 IQNPDSKVEL GFMPHNPSPS TSESMVAVPR PGNGSSASSA LGLLLQSPKF KEMLERTSVV 300 DCSSTTTLEP NMPRRSFPDD IQTYFDCQDL NSYAEGDDII FGELNSFASP VFHCELDA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 7e-98 | AP2 family protein |