PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0130271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 168aa    MW: 19123.8 Da    PI: 10.4647
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0130271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.81.2e-15466157
                            TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            rr+R+t+t++q+++L+elF++   r p+ e+ +++  +l    +++ ++V++WF N+Ra+ek+
  RcHm_v2.0_Chr2g0130271  4 RRSRWTPTTDQIRILKELFYNkgVRSPTVEQVQRIYLQLkwygKIEFKNVYFWFVNQRAREKQ 66
                            89******************7789*************************************97 PP
2Wus_type_Homeobox894.9e-29568365
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            r+RWtPt++Qi+iL+el++ +G+r+P+ e++qri  +L+ yGkie kNV++WF N++aRe+qk+
  RcHm_v2.0_Chr2g0130271  5 RSRWTPTTDQIRILKELFYnKGVRSPTVEQVQRIYLQLKWYGKIEFKNVYFWFVNQRAREKQKK 68
                            79**************98769*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MLCRRSRWTP TTDQIRILKE LFYNKGVRSP TVEQVQRIYL QLKWYGKIEF KNVYFWFVNQ  60
RAREKQKKKN LTSDVQVPKQ RTGLVGGSIN LNFGSTSSAD VGGSIMEQRG EDHQEVKTLP  120
LFPMHSEDIF GNMKTTSDRG GGHGGGSYIS LELNLSCEGK AGKSFRSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-26WOX family protein