PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0128051
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 260aa    MW: 29157.5 Da    PI: 5.7774
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0128051genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.95.5e-1674134357
                             --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                             +R+++t+ ql++L+ l++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr2g0128051  74 NRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 134
                             7****************96569*************************************97 PP
2Wus_type_Homeobox94.31.1e-3073135364
       Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                             ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  RcHm_v2.0_Chr2g0128051  73 NNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 135
                             78***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MLTRSINRCI LRDCSLQKKI LPSSSLSLST LQPFFRNSNP FFINMEPRTL QLMEQQTQQQ  60
IEDGGNNQAA GTNNRWAPTP PQLRILKGLY YDKGFKYPTP EQIQEICLHL KQYGQIEDKN  120
VFFWFQNLKA RERQKLKEFR NVPVGGSLDL NFGSTSSTDD GRSIDLNFGS RVGYGVDPYS  180
SSPFNTNTST TSFGTTGGQS FMEQRGGDHQ EIETLPLFPM HGEDIFGNMK TTSEGGSGYG  240
GDSRISLELS LNSYGDAEMV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-21WOX family protein