PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0126861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 25858.2 Da PI: 6.9701 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.5 | 6.3e-10 | 30 | 78 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +E++RR++++ ++ L +llP++ ++++ ls e +A++YIk L+ RcHm_v2.0_Chr2g0126861 30 RRVIEKNRRNHMKILYSHLNSLLPNQ--NSKEPLSLPEQIDEAINYIKTLE 78 5689*********************6..26666***************995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MGILVLNLQP DVKQVMDNTR ATTSGTKVER RVIEKNRRNH MKILYSHLNS LLPNQNSKEP 60 LSLPEQIDEA INYIKTLESN LQKSKQKRDN LKFGRKRSYE LCSSTFETRS AAPTKSPQIQ 120 IHENGSTLEV VLSTGLHNQF IFYDIIRILD QEQADVVHAS FSTSGDSILH LVRAELGKSM 180 LDFGAARITE KLKRIVNGSA SDEELQHDDQ DYFWDFQIHP QMWDF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 97 | KRDNLKFGRKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 4e-38 | bHLH family protein |