PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0125901 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 293aa MW: 32863.6 Da PI: 7.4488 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.6 | 6.7e-16 | 107 | 167 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+ ql++L+ l++ +yp+ e+++e+ +l ++++++V++WFqN +a+e++ RcHm_v2.0_Chr2g0125901 107 NRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 167 7****************96569*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 94 | 1.3e-30 | 106 | 168 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i +L++yG+iedkNVf+WFQN kaRerqk RcHm_v2.0_Chr2g0125901 106 NNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 168 78***************9889*****************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence |
MCPSRVNNFS VFLGDFNPTR RFNLRDRRSN GGDLLTRSRN RCILSDCSLQ KKILPSSSLS 60 LSTLQPFFRN SNPFFINMEP QTLQLMEQQT QQQIEDGGNN QAAGTNNRWA PTPPQLRILK 120 GLYYDKGFKY PTPEQIQEIC LHLKQYGQIE DKNVFFWFQN LKARERQKLK EFRNVPVGGS 180 LDLNFGSTSS TDDGRSIDLN FGSRVGYGVD PYSSSPFNTN TSTTSFGTTG GQSFMEQRGG 240 DHQEIETLPL FPMHGEDIFG NMKTTSEGGG GYGGGSHISL ELSLNSYRDA DMA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 2e-21 | WOX family protein |