PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0125611 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 99aa MW: 11303.9 Da PI: 10.5279 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 8.6e-08 | 37 | 74 | 2 | 37 |
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl 37 ++R+++t+ ql++L+ l++ +yp+ e+++e+ +l RcHm_v2.0_Chr2g0125611 37 SNRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHL 74 58****************96569***********9888 PP | |||||||
2 | Wus_type_Homeobox | 41.5 | 3.3e-14 | 37 | 81 | 3 | 46 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkie 46 ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i +L++ G+ + RcHm_v2.0_Chr2g0125611 37 SNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLKHMGRSR 81 79***************9889********************9865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence |
MEPRTLQLME LQTQQQMELQ AQQPTEEGGS IQAAGSSNRW APTPPQLRIL KGLYYDKGFK 60 YPTPEQIQEI CLHLKHMGRS RTKTSSFGSR TSRLVRGRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 3e-09 | WOX family protein |