PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0122031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 187aa    MW: 20980.3 Da    PI: 5.072
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0122031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox468.8e-152282357
                            --SS--HHHHHHHHHH.HHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeel.Fek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+ ql++L+ l + k  +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr2g0122031 22 NRWAPTPPQLRILKGLnYDKgFKYPTPEQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 82
                            8*************98355579*************************************97 PP
2Wus_type_Homeobox92.34.3e-302183364
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeel.yksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            ++RW+Ptp Q++iL+ l y++G + P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  RcHm_v2.0_Chr2g0122031 21 SNRWAPTPPQLRILKGLnYDKGFKYPTPEQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 83
                            79**************9788******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MELQAQQPTE EGGSIQAAGS SNRWAPTPPQ LRILKGLNYD KGFKYPTPEQ IQEICLHLKQ  60
YGQIEDKNVF FWFQNLKARE RQKLKEFRNV PVGGSLDLNF RSTSSTDDGR SIDLNFGSRV  120
GYGVDGSIME QRGEYHQEIE TLPLFPMHGE DIFGNMKTTS EGGSGYGGGS RISLELSFNS  180
YRDADMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-21WOX family protein