PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0118951
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 307aa    MW: 35566.8 Da    PI: 10.5245
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0118951genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-151096298
                            EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3  2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                            fkvl     ++ + l++p  f  +h   ++  +  +  l+++ g +W v +  +   gr++l+kGWk+Fv++ngLk g+f++F++ g+s
  RcHm_v2.0_Chr2g0118951 10 FKVL--IGDFS-DKLRIPQAFR-KHlaASV-LQ--QSHLRTPAG-TWLVDV--KSDNGRFFLQKGWKQFVHDNGLKLGEFLIFRYAGNS 88
                            5666..44444.4599999996.5644222.22..345666655.9*****..999999****************************99 PP

                            EE..EEEEE- CS
                      B3 89 efelvvkvfr 98
                            +f  +v ++ 
  RcHm_v2.0_Chr2g0118951 89 KF--YVDIYG 96
                            99..888865 PP
2B356.55.2e-18213302294
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                             f +l+++ + ++g+l +p +f++++ ++k+++ +l++   s+r W+vk    + s++  +++GW+eFv++n+Lk+gD++vF+l+++ 
  RcHm_v2.0_Chr2g0118951 213 FRTLLTETYVTKGILHIPCTFVKDYIKIKKRTAELQV---SNRLWSVKW--INDSRSSRFSQGWNEFVRQNDLKVGDVCVFELIKQt 294
                             45666777788889***********666666556664...56*******..777777779**********************99652 PP

                             .SEE..EE CS
                      B3  88 .sefelvv 94 
                              +   ++v
  RcHm_v2.0_Chr2g0118951 295 nDVVMMKV 302
                             34444444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MARKRKPSFF KVLIGDFSDK LRIPQAFRKH LAASVLQQSH LRTPAGTWLV DVKSDNGRFF  60
LQKGWKQFVH DNGLKLGEFL IFRYAGNSKF YVDIYGRHGC KKEFIMPARS SEKPFKKRHG  120
NESHRTNAVM SSSIHPKKKM DYQKSKGSAG ENKTSQETIS VKSEPIDFEL ETCMDIDESI  180
RNMNSRETLS FQPQVANSGL EAANRYSSNH PCFRTLLTET YVTKGILHIP CTFVKDYIKI  240
KKRTAELQVS NRLWSVKWIN DSRSSRFSQG WNEFVRQNDL KVGDVCVFEL IKQTNDVVMM  300
KVSFFRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-28B3 family protein