PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr2g0118731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 153aa MW: 17376.6 Da PI: 9.0394 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.7 | 1.1e-19 | 32 | 121 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 +Y+ YA+ +GF r ++ ++ g+it+r++vC+kegkre + + +++ r+ ++etr++C a ++ +k ++++ +t++++eHn RcHm_v2.0_Chr2g0118731 32 WYRMYATALGFIARLQRVTRG-IGGRITRRRLVCNKEGKREAKWLQkEDRVRNAKQETRCNCLAACCIHFNKnSQTYIITEFKTEHN 117 7**************999987.9999**************9987663567788999******9999999888899************ PP FAR1 87 Hela 90 H+la RcHm_v2.0_Chr2g0118731 118 HDLA 121 **96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 153 aa Download sequence |
MGKSRVGKSF AELTADDVEG REFTTLDDAE NWYRMYATAL GFIARLQRVT RGIGGRITRR 60 RLVCNKEGKR EAKWLQKEDR VRNAKQETRC NCLAACCIHF NKNSQTYIIT EFKTEHNHDL 120 AMHSNGSVTN ADMDTSVQGT LVQSAPLGQM TTW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-13 | FAR1 family protein |