PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0118661

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 411aa MW: 46297.8 Da PI: 6.6688

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0118661	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.5	2.6e-19	71	160	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 +Y+ YA+ +GF +r ++ ++ g+it+r++vC+kegkre + + +++ r+ ++etr++C a ++ +k ++++ +t++++eHn RcHm_v2.0_Chr2g0118661 71 WYRMYATALGFMTRLQRVTRG-IGGRITRRRLVCNKEGKREAKWLQkEDRVRNAKQETRCNCLAACCIHFNKnSQTYIITEFKTEHN 156 7*************99997.9999**********9987663567788999**9999999888899********** PP FAR1 87 Hela 90 H+la RcHm_v2.0_Chr2g0118661 157 HDLA 160 *996 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MNFEHPSSSD CRYTEVQSAD HDSSEPPQEE RVSYGDENFT AKSRVGKSFA ELTAEDVEGR 60 EFATLDDAEN WYRMYATALG FMTRLQRVTR GIGGRITRRR LVCNKEGKRE AKWLQKEDRV 120 RNAKQETRCN CLAACCIHFN KNSQTYIITE FKTEHNHDLA MHSNGSVTHA DMGHLGARRT 180 CSVSTSRADD YTVKCNGGFE FVGDTEKDLF NKIEAEPRAK LFKQGEETAQ IVEVSDITMP 240 PWSINLVGFG DEYRCDHVDI PRGVTYSYVS LSPHVKAVSA DTASTLLLQI AGLTSIATEQ 300 SLKARDEILR LKRDSELALK TKEAEAAVLK RELAECRREL ELVKSADKYK YRTIEEVGGN 360 SKKQITEDNC NRGQSPEGGA DIQLLCSLGG WKSGFAPDKD MEFDSSKRKR R

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MNFEHPSSSD CRYTEVQSAD HDSSEPPQEE RVSYGDENFT AKSRVGKSFA ELTAEDVEGR  60
EFATLDDAEN WYRMYATALG FMTRLQRVTR GIGGRITRRR LVCNKEGKRE AKWLQKEDRV  120
RNAKQETRCN CLAACCIHFN KNSQTYIITE FKTEHNHDLA MHSNGSVTHA DMGHLGARRT  180
CSVSTSRADD YTVKCNGGFE FVGDTEKDLF NKIEAEPRAK LFKQGEETAQ IVEVSDITMP  240
PWSINLVGFG DEYRCDHVDI PRGVTYSYVS LSPHVKAVSA DTASTLLLQI AGLTSIATEQ  300
SLKARDEILR LKRDSELALK TKEAEAAVLK RELAECRREL ELVKSADKYK YRTIEEVGGN  360
SKKQITEDNC NRGQSPEGGA DIQLLCSLGG WKSGFAPDKD MEFDSSKRKR R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	7e-12	FAR1 family protein