PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0111031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 543aa    MW: 60346.1 Da    PI: 5.9674
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0111031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.6e-11239295155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g
  RcHm_v2.0_Chr2g0111031 239 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDMEDKAARAYDLAALKYWG 295
                             57*******************4444.2344335555.77***99*************98 PP
2AP2491.5e-15340389355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  RcHm_v2.0_Chr2g0111031 340 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 389
                             9***************988532...5************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    
MAPATNWLSF SLMSPMEMLR SSSESESPFA QAYDTAAVTA PSPHYYLDNF YANGWTNPKS  60
EVFYTEGEED QQTKQTHSDS LASFIDPQTQ NQPIPKLEDF LGDSMVRYAD SQTETQDSSL  120
TQIYDQGSAY FGDHHQNQDL KAITGFQAFS ANSGSEVEDS ASMARTQLAC AEFTGHSVES  180
IGNELGFSSC GATNTSNALS LGVTNTNTST QTSNREKAIV AVDTDSTKKI SDTFGQRTSI  240
YRGVTRHRWT GRYEAHLWDN SCRREGQARK GRQGGYDMED KAARAYDLAA LKYWGPTATT  300
NFPVSTYSKE LEDMKLVTKQ EFIASLRRKS SGFSRGASMY RGVTRHHQQG RWQARIGRVA  360
GNKDLYLGTF ATEEEAAEAY DIAAIKFRGI NAVTNFEMNR YDVEAIGKSS LPVGGSAKRL  420
KISLESEEQK PSVTNHDQQQ QNSQCSSGSN SNNINFANSM AQPIQTIPCG IPYDHAAALY  480
HHNLLQQFQS YNYYGTTSDS SAGSHPNIAT SQMTMAMMPQ QQQQQQQQPA EFFLWPQYQT  540
HHS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-178AP2 family protein