PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0109621

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 353aa MW: 39390.1 Da PI: 6.4089

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0109621	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.6e-12	175	221	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq RcHm_v2.0_Chr2g0109621 175 DHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 221 699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MDVSSAKWFS DLGMDDYNFI HEGFTAQDIA TALGENFKQS FSNESYSSYA TLTTQKSPNT 60 TLSGGSSINE TNSQTSFERP AKQVKTNSWN SAITEHVSPK PSCNSSSSHI LSFENTNLNS 120 SPPSKPHQQF SNGFDTTLRP KDEAPSEICM QFENQGYGTN KRPYSMTRTP SHAQDHIMAE 180 RKRREKLSQR FIALSAIVPG LKKMDKASVL GDAIKYVKQL QESVKVLEEQ TKKRTVESVV 240 FVKKSQLVSS DDDTSSCDEN FDGRSSDESL PQIEARVSEK DVLIRIHCEN QKGYVVKILS 300 EIEKFQLSVV NSSVLPFGKS TLDITIIAQM DDECNMTLTD LAKSLRVALL KFM

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MDVSSAKWFS DLGMDDYNFI HEGFTAQDIA TALGENFKQS FSNESYSSYA TLTTQKSPNT  60
TLSGGSSINE TNSQTSFERP AKQVKTNSWN SAITEHVSPK PSCNSSSSHI LSFENTNLNS  120
SPPSKPHQQF SNGFDTTLRP KDEAPSEICM QFENQGYGTN KRPYSMTRTP SHAQDHIMAE  180
RKRREKLSQR FIALSAIVPG LKKMDKASVL GDAIKYVKQL QESVKVLEEQ TKKRTVESVV  240
FVKKSQLVSS DDDTSSCDEN FDGRSSDESL PQIEARVSEK DVLIRIHCEN QKGYVVKILS  300
EIEKFQLSVV NSSVLPFGKS TLDITIIAQM DDECNMTLTD LAKSLRVALL KFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	185	ERKRRE
2	181	186	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-78	bHLH family protein