PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0109611

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 351aa MW: 39272.2 Da PI: 6.426

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0109611	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	3.9e-12	175	221	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq RcHm_v2.0_Chr2g0109611 175 DHVLAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYVKQLQ 221 58899********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MEMISSAKWV SELEMEDPTF LNQYEMNSHL DYSLEDLNFQ SFSAESYSSY PDFTPHQNDV 60 DQRPAKQPKN NHSNWNSCTT THDHIITVPR ASSSASSHLI SFDNSNSSAY GSLDCTTTVK 120 PKNEVLGSGG KLNSISNMIS QGNSYDPQTC SPNRAYGQGI KRAATVTRSP LHAQDHVLAE 180 RKRREKLSQR FIALSALVPG LKKMDKASVL GDAIKYVKQL QERMKILEEQ AAKKTVESVV 240 FVKRTQYSVD DDISSSDENF DSCSDQPLPE IEARVSDKEV LLRIHCEKKK GCLANILSEI 300 EKLDLTILNS SVLPFGNSTL DITVVSQIDV EYSMTVKELV RKLRQALLKL V

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MEMISSAKWV SELEMEDPTF LNQYEMNSHL DYSLEDLNFQ SFSAESYSSY PDFTPHQNDV  60
DQRPAKQPKN NHSNWNSCTT THDHIITVPR ASSSASSHLI SFDNSNSSAY GSLDCTTTVK  120
PKNEVLGSGG KLNSISNMIS QGNSYDPQTC SPNRAYGQGI KRAATVTRSP LHAQDHVLAE  180
RKRREKLSQR FIALSALVPG LKKMDKASVL GDAIKYVKQL QERMKILEEQ AAKKTVESVV  240
FVKRTQYSVD DDISSSDENF DSCSDQPLPE IEARVSDKEV LLRIHCEKKK GCLANILSEI  300
EKLDLTILNS SVLPFGNSTL DITVVSQIDV EYSMTVKELV RKLRQALLKL V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	185	ERKRRE
2	181	186	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-68	bHLH family protein