![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr2g0106221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 535aa MW: 59613.3 Da PI: 6.8882 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.9e-17 | 171 | 220 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g RcHm_v2.0_Chr2g0106221 171 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 220 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.9 | 2.6e-13 | 263 | 313 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ +Aa+a+++a+ k +g RcHm_v2.0_Chr2g0106221 263 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIDAARAYDKAAIKCNG 313 89********.7******5553..2.26**********99**********99776 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 535 aa Download sequence |
MWDLNDSPDQ RPVDDESEGC SSQKTNSGDG DDDKGKRVGS VSNSSSSAVV IEDGSDVDED 60 AYPNANRKRG SKIFGFSVTD DDVDGTDPQP VTRQFFPMDE SSEMEPTRAG GAVGAAAASP 120 SSSFPRAHWV GVKFCQADSG GPGKAAEPSP QQQQQQQPMK KSRRGPRSRS SQYRGVTFYR 180 RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VEADINFNID DYEEDLKQMS 240 NLTKEEFVHV LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEIDA 300 ARAYDKAAIK CNGKEAVTNF DPSIYESELN STEPSSINAG DHNLDLSLGN SKSKKNNPAF 360 GTAQNHTHQN AAMEQQQQPS ASMQFEADWR NNQGFRPKPR EDNEMRRRDG YLENETMQLL 420 LRTNLQSPSP TQMHKYGQFN QFRNPAGETP AQMPHHFPPH TFNPPNYQIQ FPSSSEVGAR 480 IGSDLTLSMS DRQQWQSGHP SELFLNAAAS SGFPPQIRPP SQNGWLQKNN GFHSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36920.1 | 1e-123 | AP2 family protein |