PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0106221
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 535aa    MW: 59613.3 Da    PI: 6.8882
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0106221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.9e-17171220155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  RcHm_v2.0_Chr2g0106221 171 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 220
                             78*******************......55************************997 PP

2AP241.92.6e-13263313155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ +Aa+a+++a+ k +g
  RcHm_v2.0_Chr2g0106221 263 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIDAARAYDKAAIKCNG 313
                             89********.7******5553..2.26**********99**********99776 PP

Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    
MWDLNDSPDQ RPVDDESEGC SSQKTNSGDG DDDKGKRVGS VSNSSSSAVV IEDGSDVDED  60
AYPNANRKRG SKIFGFSVTD DDVDGTDPQP VTRQFFPMDE SSEMEPTRAG GAVGAAAASP  120
SSSFPRAHWV GVKFCQADSG GPGKAAEPSP QQQQQQQPMK KSRRGPRSRS SQYRGVTFYR  180
RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VEADINFNID DYEEDLKQMS  240
NLTKEEFVHV LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEIDA  300
ARAYDKAAIK CNGKEAVTNF DPSIYESELN STEPSSINAG DHNLDLSLGN SKSKKNNPAF  360
GTAQNHTHQN AAMEQQQQPS ASMQFEADWR NNQGFRPKPR EDNEMRRRDG YLENETMQLL  420
LRTNLQSPSP TQMHKYGQFN QFRNPAGETP AQMPHHFPPH TFNPPNYQIQ FPSSSEVGAR  480
IGSDLTLSMS DRQQWQSGHP SELFLNAAAS SGFPPQIRPP SQNGWLQKNN GFHSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.11e-123AP2 family protein