PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0105931
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 375aa    MW: 40959.4 Da    PI: 5.1219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0105931genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67e-16149195455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  RcHm_v2.0_Chr2g0105931 149 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 195
                             6*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    
MGMGDTYDYN YQNNPCSSSA PASSVSVAQP HSSTDEISLF LQQILVRSSS LSGQPFLFSS  60
SPAGYALPEN LGRPCNDSFV GSGIRGVDVS TAVGTGSGPN VSSSSVGASE NEADEYDCES  120
EEGLEALVEE AAMKSRGRCS SKRSRAAEVH NLSEKRRRSR INEKMKALQN LIPNSNKTDK  180
ASMLDEAIEY LKQLQLQVQM LSMRNGMSLH PMCLPGASQL SQIRMDFGEE NRPLHLNMSG  240
TLNMNQEPST QNLYNPNQSY VPDMSNVVNS EEAFGLESSI QAHLGPFQLP NSSKGICRDE  300
LFQHQLNSVN HSETNPLEFE LGATATVSLP FTAQVSDLKD YSSLETCIIG RDQRESRPSK  360
SIGQHLHLDR QKGPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-49bHLH family protein