PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0102221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 24750.9 Da PI: 6.3789 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 58 | 112 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t+eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ RcHm_v2.0_Chr2g0102221 58 KKRKLTEEQVTLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKN 112 45699************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 118.8 | 2.9e-38 | 58 | 149 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 kkr+l++eqv+lLE +F +e+kLe+e+K +la+eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+ +++++ e+++Le+e+e+L+ RcHm_v2.0_Chr2g0102221 58 KKRKLTEEQVTLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSILKKDHENVVLEKCKLESEMEKLK 144 9************************************************************************************** PP HD-ZIP_I/II 89 eelke 93 e+l+e RcHm_v2.0_Chr2g0102221 145 EQLSE 149 **986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MTTTTPINHQ VDQDHMLLIS QLYPDVYTQI VPPQGAATKP RRRRKKSKSG EAGGAGAKKR 60 KLTEEQVTLL ELNFGNEHKL ESEKKDRLAS ELGLDPRQVA VWFQNRRARW KNKKLEEEYS 120 ILKKDHENVV LEKCKLESEM EKLKEQLSEA EKEIHRLSER AEGGGSSNSP SSSLSMEANI 180 DPPFFGEFGV EEYDGVFYMP QNNYINGMEW MNQYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 60 | RRRRKKSKSGEAGGAGAKKR |
2 | 41 | 61 | RRRRKKSKSGEAGGAGAKKRK |
3 | 42 | 61 | RRRRKKSKSGEAGGAGAKKR |
4 | 42 | 62 | RRRRKKSKSGEAGGAGAKKRK |
5 | 43 | 63 | RRRRKKSKSGEAGGAGAKKRK |
6 | 44 | 64 | RRRRKKSKSGEAGGAGAKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-71 | HD-ZIP family protein |