PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0100471

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 647aa MW: 74480.6 Da PI: 7.3296

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0100471	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.3	2.3e-22	37	122	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 Yn+YA e GFs+rk + ++ + ++ +r++ Cskeg++ +e+ e ++ +r trtgCka+++ + + +gkw++++++ HnHe RcHm_v2.0_Chr2g0100471 37 LYNTYAFEKGFSIRKGTVRRD-AQSNVRQRDYFCSKEGFPLDEEMG-EVKKVRRLDTRTGCKAMVRFTVD-NGKWKIAQFNPVHNHE 120 7**************9999.5555*************999.899999************9.*************9 PP FAR1 89 la 90 +a RcHm_v2.0_Chr2g0100471 121 FA 122 86 PP

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence
MDSGWQRNVL ENGDKVGESD ELRVGMEVSN ETEAYELYNT YAFEKGFSIR KGTVRRDAQS 60 NVRQRDYFCS KEGFPLDEEM GEVKKVRRLD TRTGCKAMVR FTVDNGKWKI AQFNPVHNHE 120 FAKPEERQFL RSSRHIPTVR AAIIGSSKVD ASVRPTKSQS HLEKEMGSTD NAGHNCLHRM 180 KEEMIEGADG QSLLDYLKHQ QMEDSNFFYS VQVDQYNRVT NFFWRDSRSK LDYDCFGDVV 240 LFDTTFRTKK YNLICAPFVG VDHHWKNVLF GCAFLSDERT DSFIWLFETF LESMGNKRPK 300 TIFTDEDNAM EKAIEIILPG TRHRLCTWNI SKNASQYLAS HLANPEFKEC FNKCVHDCVT 360 EAEFEATWDD MVKKFNLENN LWLKKLYLLR EKWCPAFSSD TFTANIGCDQ RGENINTTFH 420 QISTKTMDLI GLAQHYEKKT KVLRSAEAEE DFRCKNGMPR LKVNTGIFKH AAAEYTIKMY 480 SFFENELLST FGVRMMEVGN DGNQYVYEAI EEGHQRVYII EYNSTTSMIC CSCKLFESMG 540 VLCRHALKVL GLKNFMSIPA QYIVKRWTRG AKKQNAMSGG LCELSCKRAK SAQSLRLSEL 600 MHEGNNVFSI GSLCDSGTRI VKQKLVEAMK LLESDEETTS MLGTLNK

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence

MDSGWQRNVL ENGDKVGESD ELRVGMEVSN ETEAYELYNT YAFEKGFSIR KGTVRRDAQS  60
NVRQRDYFCS KEGFPLDEEM GEVKKVRRLD TRTGCKAMVR FTVDNGKWKI AQFNPVHNHE  120
FAKPEERQFL RSSRHIPTVR AAIIGSSKVD ASVRPTKSQS HLEKEMGSTD NAGHNCLHRM  180
KEEMIEGADG QSLLDYLKHQ QMEDSNFFYS VQVDQYNRVT NFFWRDSRSK LDYDCFGDVV  240
LFDTTFRTKK YNLICAPFVG VDHHWKNVLF GCAFLSDERT DSFIWLFETF LESMGNKRPK  300
TIFTDEDNAM EKAIEIILPG TRHRLCTWNI SKNASQYLAS HLANPEFKEC FNKCVHDCVT  360
EAEFEATWDD MVKKFNLENN LWLKKLYLLR EKWCPAFSSD TFTANIGCDQ RGENINTTFH  420
QISTKTMDLI GLAQHYEKKT KVLRSAEAEE DFRCKNGMPR LKVNTGIFKH AAAEYTIKMY  480
SFFENELLST FGVRMMEVGN DGNQYVYEAI EEGHQRVYII EYNSTTSMIC CSCKLFESMG  540
VLCRHALKVL GLKNFMSIPA QYIVKRWTRG AKKQNAMSGG LCELSCKRAK SAQSLRLSEL  600
MHEGNNVFSI GSLCDSGTRI VKQKLVEAMK LLESDEETTS MLGTLNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-113	FAR1 family protein