PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0100091
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family E2F/DP
Protein Properties Length: 286aa    MW: 32167.4 Da    PI: 9.6217
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0100091genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP56.93.4e-1876153871
                 E2F_TDP   8 lltqkflkllek..seegivtlnevakeLvse.......dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                              l+q+f+kl+ +  se++ ++++e+ak L+          +++k RRiYDi+NVL+++nliek     + k+++rw g
  RcHm_v2.0_Chr2g0100091  76 SLAQNFVKLFVCtgSESKSISVDEAAKLLLGVrdaqnvsVMRTKMRRIYDIANVLSSVNLIEKthtadTGKPAYRWLG 153
                             47899999887754777************87788**999999************************999*******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MDLWICELAL NHGHFLLPGN PQTSRKSKNT YLWKGFGAVP NALKELREEG LDLTPIPATC  60
NNNNNNPLDE TKREKSLAQN FVKLFVCTGS ESKSISVDEA AKLLLGVRDA QNVSVMRTKM  120
RRIYDIANVL SSVNLIEKTH TADTGKPAYR WLGLNGRRDG LNLNSESNLE QAKKRSFGTD  180
LMDASSKRSK VVEKRVQDQG EVENCNSDGC GAKESSKSYQ FGSFTPVVVP RARKGVDINK  240
VCWESLGAYY RPQYQNQAMK ELFSHYREAW MLWNSQVAKK NPIQSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.23e-55E2F/DP family protein