PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0099501
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 299aa    MW: 32872 Da    PI: 7.4468
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0099501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.1e-193091257
                            T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            ++R+t+t++q+++L+el+++   r p+ae+++++  +l    +++ ++V++WFqN++a+e++
  RcHm_v2.0_Chr2g0099501 30 STRWTPTTDQIRILKELYYNkgVRSPTAEQIQRICLQLkrygKIEGKNVFYWFQNHKARERQ 91
                            58****************97689*************************************97 PP
2Wus_type_Homeobox111.44.7e-362993265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            ++tRWtPt++Qi+iL+ely+ +G+r+P++e+iqri  +L++yGkie+kNVfyWFQN+kaRerqk+
  RcHm_v2.0_Chr2g0099501 29 SSTRWTPTTDQIRILKELYYnKGVRSPTAEQIQRICLQLKRYGKIEGKNVFYWFQNHKARERQKK 93
                            789***************9779*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MEPQTQQPTE DGGSNKAAGS SANMLCRQSS TRWTPTTDQI RILKELYYNK GVRSPTAEQI  60
QRICLQLKRY GKIEGKNVFY WFQNHKARER QKKRFTSDVH VPMQRSGLVG NGNGTNWKPE  120
DQYINMNNKY SNICQGVSSA SASASSAGVI AFNGQMGNYG GYGSMNMEKS FRDCSISAGG  180
GTSSTGVGGS ISHNFGSWVG CNVDPYSSSS YTTSTSTTFF DMNEEQTFME QRGEDHQEIE  240
TLPLFPMHGE DIFGNMKTTS EGGGGYGYYS GGWGGYNGGS RTSLELSLNS YGYNTTNYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-37WOX family protein