PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0099391
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 317aa    MW: 35061.1 Da    PI: 7.8162
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0099391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.75e-094089154
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            r++ +  rE+ RRdr+N+ f  L   l ++     +K++Ka+iL  +++ +k+L
  RcHm_v2.0_Chr2g0099391 40 RKVQKADREKLRRDRLNEHFLDLGNTLDPD----RPKNDKATILIDTIQMLKDL 89
                            5677889********************997....79****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MDQWKGDDFA GVSAPSSSQP LACDSRKRAD LETKDPVSAR KVQKADREKL RRDRLNEHFL  60
DLGNTLDPDR PKNDKATILI DTIQMLKDLT SDVNKLKAEC AALNDESREL TVEKNELREE  120
KASLKSDIEN LNAQYQQRVR VMFPWGAMDP SVVMAPPYSY PMPVAVPPGP IPMHPSLQPF  180
PYYQTQNPAT VPNSCPTFVS YPTPINRPIE QPLPQPQYAS VSHVSSKQDS KSKSSDHQRG  240
SNAERCDGSN DVATELVLKM PGSSAHQESS CGARKGKQSR TKDRNITDGS CSSRYSSSQV  300
VQESSSNSVG DIPKTNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.18e-70bHLH family protein