PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0099031

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 556aa MW: 63863.7 Da PI: 9.6357

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0099031	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	1.9e-08	497	543	3	45
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwq 45 W+ e + l++a k +++ +W++Ia+ ++ +t++qck ++ RcHm_v2.0_Chr2g0099031 497 VWSVEQERALIQAMKTVPKElsggaRWERIAAAVP-EKTANQCKKKFA 543 7***************99***********.9*****9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MGSNGSKRQA ADHYTLLGLS DLREAATPEQ IRKAYLKSAL KYHPDKLTFL ILAEQSEAAR 60 KAKKEEIDTH FKKIVAAYEV LSDPVQRGNY DSGRIYSSSS SGGHTSTDSS TSTPTEDHHH 120 QHQRHDVDDE IPSDCAPGDF FKVFGPAFER NARWSAKKPV PGLGNERTPM EEVDKFYEFW 180 YSFKSSRDFT GTYQYKRDRE WAMRQEYIRI RRLADNAYGK DPRILRRKEE EKAEKERKKM 240 EKKMRKEAEA RAAEEERRRR EEEEKRAAEV ALEQKKVKEG ERKLLKKERS RFRTLSVGLH 300 GLEKDDVERL CTWFDFEKLR NVCERIEDGK DEGLMDRLAK IVSEIKREED ENKKSSTQQQ 360 TQNENESNGN VNGSVKEERP WGKEEIELLR KGMMKFPKGT PRRWEVVSEY IGTGRSVEEV 420 LKAMKTVLLK KPDDSKAFDS FLEKRKPSKS IDSPLTTRIE VEGVSMSSTS TSTSRPPPND 480 QKSASGSTSS SSEQDDVWSV EQERALIQAM KTVPKELSGG ARWERIAAAV PEKTANQCKK 540 KFALLKENLR SKKSSA

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MGSNGSKRQA ADHYTLLGLS DLREAATPEQ IRKAYLKSAL KYHPDKLTFL ILAEQSEAAR  60
KAKKEEIDTH FKKIVAAYEV LSDPVQRGNY DSGRIYSSSS SGGHTSTDSS TSTPTEDHHH  120
QHQRHDVDDE IPSDCAPGDF FKVFGPAFER NARWSAKKPV PGLGNERTPM EEVDKFYEFW  180
YSFKSSRDFT GTYQYKRDRE WAMRQEYIRI RRLADNAYGK DPRILRRKEE EKAEKERKKM  240
EKKMRKEAEA RAAEEERRRR EEEEKRAAEV ALEQKKVKEG ERKLLKKERS RFRTLSVGLH  300
GLEKDDVERL CTWFDFEKLR NVCERIEDGK DEGLMDRLAK IVSEIKREED ENKKSSTQQQ  360
TQNENESNGN VNGSVKEERP WGKEEIELLR KGMMKFPKGT PRRWEVVSEY IGTGRSVEEV  420
LKAMKTVLLK KPDDSKAFDS FLEKRKPSKS IDSPLTTRIE VEGVSMSSTS TSTSRPPPND  480
QKSASGSTSS SSEQDDVWSV EQERALIQAM KTVPKELSGG ARWERIAAAV PEKTANQCKK  540
KFALLKENLR SKKSSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	278	KKMRKEAEARAAEEERRRREEEEKRAAEVALEQKKVK
2	256	261	ERRRRE
3	275	287	KKVKEGERKLLKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	1e-122	MYB family protein