PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0096701

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 801aa MW: 92410.1 Da PI: 7.1105

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0096701	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	96.2	3.8e-30	93	187	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 fYn+YA+++GFs+r+s s++s+r+g i++r fvC keg+r ++++k + + +r+raetr+gCka+l+vk +++g w+v+ +++ RcHm_v2.0_Chr2g0096701 93 FYNSYARRTGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRMDKHEKrgpecDGRVKRPRAETRVGCKAMLVVKIQDSGGWVVSCFVK 179 9***************************************99999999999999*************************** PP FAR1 84 eHnHelap 91 eHnHel+p RcHm_v2.0_Chr2g0096701 180 EHNHELVP 187 ****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence
MYTCNFWIKR MSKLCPFGKM EFEPLSLGNE VVEFDLMGLG DIDHPVADID IFDDSLAVVG 60 SNPIALPYIV EGETNLEPYE GMEFESEEAA KAFYNSYARR TGFSTRVSMS RRSRRDGAII 120 QRSFVCAKEG FRMDKHEKRG PECDGRVKRP RAETRVGCKA MLVVKIQDSG GWVVSCFVKE 180 HNHELVPPDK VHCLRSHRHV SGSAKSLVDT LQGAGIGPSG IMSALIKEYG DISKVGFTER 240 DCRNYMRSSR QRTLGGDTRV LLDYLKNRQA NDPAFFYSVQ GDQDQCMSNI FWADPKARSD 300 YTYFGDTVTF DTIYRSNRYR LPFAPFTGVN HHGQPVLFGC ALLVNESEAS FLWLFKTWLM 360 AMSGRPPVSI TTDHDRVIRM AITQVFPETR HRFCKWHIFK ECQEKLSHVL SEHSNFEAEL 420 HKCVNLTESI EEFESSWLSL IEKYDLRDHE WLQGIYADRR QWVPIYLRDT FFAEMSITQR 480 SNTMNSYFDG YVNASTSLQL FVKQYEKALE SRYEKEVKAD YDTINTAPLL KTPSPMEKQA 540 GELYTRKLFM KFQEELVETL TFLATKVEDE EAGSIYQVAK FGESHRAYFV RYNVHEMKAF 600 CSCQMFEFSG LLCGHILTVF RVTNVLTLPS HYILKRWTRN AKSDVILEER ASNLLNRSQE 660 SLMARYNNLR HEALKYVDEG VGTVEIYNVA IAALQEAAKK VALENKSGRR LVNVNKTGRD 720 DDLHWGCQAN TFGDHIWGLE TLSPDDQDKK IQKLSRQLER ARRKCEVYRT HLFSVLKDIE 780 EQKLQLSVKV QNIRIEMEEC N

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence

MYTCNFWIKR MSKLCPFGKM EFEPLSLGNE VVEFDLMGLG DIDHPVADID IFDDSLAVVG  60
SNPIALPYIV EGETNLEPYE GMEFESEEAA KAFYNSYARR TGFSTRVSMS RRSRRDGAII  120
QRSFVCAKEG FRMDKHEKRG PECDGRVKRP RAETRVGCKA MLVVKIQDSG GWVVSCFVKE  180
HNHELVPPDK VHCLRSHRHV SGSAKSLVDT LQGAGIGPSG IMSALIKEYG DISKVGFTER  240
DCRNYMRSSR QRTLGGDTRV LLDYLKNRQA NDPAFFYSVQ GDQDQCMSNI FWADPKARSD  300
YTYFGDTVTF DTIYRSNRYR LPFAPFTGVN HHGQPVLFGC ALLVNESEAS FLWLFKTWLM  360
AMSGRPPVSI TTDHDRVIRM AITQVFPETR HRFCKWHIFK ECQEKLSHVL SEHSNFEAEL  420
HKCVNLTESI EEFESSWLSL IEKYDLRDHE WLQGIYADRR QWVPIYLRDT FFAEMSITQR  480
SNTMNSYFDG YVNASTSLQL FVKQYEKALE SRYEKEVKAD YDTINTAPLL KTPSPMEKQA  540
GELYTRKLFM KFQEELVETL TFLATKVEDE EAGSIYQVAK FGESHRAYFV RYNVHEMKAF  600
CSCQMFEFSG LLCGHILTVF RVTNVLTLPS HYILKRWTRN AKSDVILEER ASNLLNRSQE  660
SLMARYNNLR HEALKYVDEG VGTVEIYNVA IAALQEAAKK VALENKSGRR LVNVNKTGRD  720
DDLHWGCQAN TFGDHIWGLE TLSPDDQDKK IQKLSRQLER ARRKCEVYRT HLFSVLKDIE  780
EQKLQLSVKV QNIRIEMEEC N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein