PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0096091

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 430aa MW: 46607.7 Da PI: 4.4099

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0096091	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.8e-12	251	296	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+Pk+ K +Ka++L + +eY+k Lq RcHm_v2.0_Chr2g0096091 251 HSIAERLRREKIADRMKNLQELVPKS-----NKTDKASMLDEIIEYVKFLQ 296 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MMDEILDHFF SSSSWTDVDV KERSSLDCYE NPPTNEMFLS SLGVIEDDSN NSATNLSNSN 60 HSMESMAAQS ANSSVAHDFE SDAQDNGNNC TANFSINDQM GLQYDLDGNM ARSTSVSSLE 120 PQNVGGNCCE QSVFQRLNGD IKTLSPISQL WPLQAYEGVS SPLCPPGMGQ QKLCSFGSND 180 IYELSDLVTT EVSQEMGNYP LPSFASGPQI PMAMAGLQSF PQTTSTNPSA ECTGPRKPRM 240 RARRGQATDP HSIAERLRRE KIADRMKNLQ ELVPKSNKTD KASMLDEIIE YVKFLQQQLK 300 VLSARRLGAT GAVILDNQAE GTNGISQSPS LGQVAHDISF NEIAFEQVLK LMETDVTKAM 360 HYLQSKGLCM MPVALANAIL AEKESSPAPD SAENLKNSGF TDDGFVHNPS SSSSSNSNTL 420 PGTDKTAVNP

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MMDEILDHFF SSSSWTDVDV KERSSLDCYE NPPTNEMFLS SLGVIEDDSN NSATNLSNSN  60
HSMESMAAQS ANSSVAHDFE SDAQDNGNNC TANFSINDQM GLQYDLDGNM ARSTSVSSLE  120
PQNVGGNCCE QSVFQRLNGD IKTLSPISQL WPLQAYEGVS SPLCPPGMGQ QKLCSFGSND  180
IYELSDLVTT EVSQEMGNYP LPSFASGPQI PMAMAGLQSF PQTTSTNPSA ECTGPRKPRM  240
RARRGQATDP HSIAERLRRE KIADRMKNLQ ELVPKSNKTD KASMLDEIIE YVKFLQQQLK  300
VLSARRLGAT GAVILDNQAE GTNGISQSPS LGQVAHDISF NEIAFEQVLK LMETDVTKAM  360
HYLQSKGLCM MPVALANAIL AEKESSPAPD SAENLKNSGF TDDGFVHNPS SSSSSNSNTL  420
PGTDKTAVNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	7e-51	bHLH family protein