PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0094491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 33398.4 Da PI: 6.8445 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.2 | 2.1e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed l +++k +G g+W+ +++ g++R++k+c++rw++yl RcHm_v2.0_Chr2g0094491 14 RGAWTALEDRDLTEYIKVHGEGRWRNLPQKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+v+++k+lG++ W++Ia +++ gRt++++k++w++ RcHm_v2.0_Chr2g0094491 67 RGNISPDEEELIVKLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7899******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence |
MGRSPCCAKE GLNRGAWTAL EDRDLTEYIK VHGEGRWRNL PQKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SPDEEELIVK LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRIQDQE 120 ARSSPSSAGG EEPKSKKAKN VMASPFSHNV IRTKAAKCNK VFINPQLPHK GLFQMDDHRP 180 MDHHQHVDHR PDENGLSSSP SLLETSSSSE FLVDFGMNSD LCLASLLSSK FSSGDHLFSE 240 EMQLQEQYWS GNVGSGEDCV VDDQLQLNTV LNFQSLNYFL DADANQGDWL ELAESS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 8e-62 | MYB family protein |