PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0094481
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 323aa    MW: 36555.1 Da    PI: 5.6458
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0094481genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.23e-164188148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+W+t Ed++l d+v  +G g+W+  +++ g++R++k+c++rw +yl
  RcHm_v2.0_Chr2g0094481 41 RGAWSTMEDQILTDYVLTYGEGRWRDLPQKAGLNRCGKSCRLRWINYL 88
                            89********************************************97 PP
2Myb_DNA-binding52.31.3e-1694138147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  RcHm_v2.0_Chr2g0094481  94 RGNISAEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 138
                             7899******************.*********.************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MHTCVSQYGK ADLSCSLISL KISDILKMGR KPCCEKEGVI RGAWSTMEDQ ILTDYVLTYG  60
EGRWRDLPQK AGLNRCGKSC RLRWINYLRP DIKRGNISAE EEDLIIRLHK LLGNRWSLIA  120
GRLPGRTDNE IKNYWNTTLC KRSPSMEQND EEKASRLKKC TARSKQRVSA ESQKKQVEVI  180
RTKAVKCSKV FIPSHLHSYT NAVTNSASSE YSTEVPGSSA AQEQNSCGLV MDFDINDLLI  240
SDMLESSKDF LQHQVNECHE DQMGDDGAKL EDLLMAEARS ENWMASTHDY PFQPNIDDEH  300
VDLNALSSFL SAADDDDHDW IIG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.17e-61MYB family protein