PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0094451
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 276aa    MW: 32151.4 Da    PI: 9.5185
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0094451genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.9e-1762109148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g+W++eEdell+++ + +G   W+ I++  g++R++k+c++rw++yl
  RcHm_v2.0_Chr2g0094451  62 KGAWSAEEDELLIRYMRTHGICKWRDIPQGAGLNRCEKSCRLRWRNYL 109
                             79*********************************************7 PP
2Myb_DNA-binding51.52.4e-16115159147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  RcHm_v2.0_Chr2g0094451 115 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNHWNSN 159
                             78999*****************.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MLMRIKTALH NNASSHVCVT AYLSRRVSQI RSSGLKPSIY PDFRFQRKMV RKPCCNKESV  60
NKGAWSAEED ELLIRYMRTH GICKWRDIPQ GAGLNRCEKS CRLRWRNYLR PDIVRGNISD  120
DEEDLIIRLH KLLGNRWSLI AGRLPGRTDN EIKNHWNSNL RKRLLKKAAR NQSKAHHPRG  180
EPSNYNLKEA EGSTHTKDKN KAGPSKITTD QHQEPKNYSA TFLMDLEMYT NDHDPFISDQ  240
LKSTDIDHDF YLAEWIDQLC EDHGDMHREE LGTART
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-55MYB family protein