PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0094411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 26164.2 Da PI: 7.481 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.5 | 1.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEde lv++++ +G+g W+ I+++ g++R++k+c++rw++yl RcHm_v2.0_Chr2g0094411 14 KGAWSVEEDEVLVHYIETHGTGKWRDIPQRAGLNRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.6e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++++del+ +++++lG++ W++Ia +++ gRt++++k++w++ RcHm_v2.0_Chr2g0094411 67 RGNISADDDELIFRLHNLLGNR-WTLIAGRLP-GRTDNEIKNHWNTN 111 7899******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MGRKPCCNKQ GVKKGAWSVE EDEVLVHYIE THGTGKWRDI PQRAGLNRCG KSCRLRWLNY 60 LRPDIKRGNI SADDDELIFR LHNLLGNRWT LIAGRLPGRT DNEIKNHWNT NLSKRSLEQA 120 PHNDIEAHDH DHHHQHDEYP SKKLKEAEDI IYTEDQNKAI RTKAFELMKD LIIPSTIALD 180 DNSTIDNSHH HEIEKAISSS SSVVADLHHQ ELSNSCGGGG WRRRIQPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-59 | MYB family protein |